BIL Manoa

Summary:

Research: metagenomics simulation, metagenomics assembly, metagenomics annotation.

Affiliations:

• Department of Computer & Information Sciences, College of Natural Sciences

People:

• PI: Baek, Kyungim, Ph.D.
  
• PI: Poisson, Guylaine, Ph.D.
  

Resources:

Software

• Anacle ( Software )
  

  Software shared with INBRE Bioinformatics Core.

• FragAnchor ( Algorithmic software component )
  

  Software shared with INBRE Bioinformatics Core.
  
  IMPORTANT: FRAGANCHOR IS NOT MAINTAINED ANYMORE.
  
  FragAnchor is based on the tandem use of a Neural Network predictor and a Hidden Markov Model predictor. The Neural Network is used to select the potential GPI-anchored sequences and the Hidden Markov Model classifies the selected sequences according to four different levels of precision (highly probable, probable, weakly probable, potential false positive). The Hidden Markov Model proposes also up to three possible locations for the anchor/cleavage site.

• GPI-DB ( Software )
  

  Software shared with INBRE Bioinformatics Core.
  
  "A GPI-anchor prediction database for fragAnchor."

• MEST ( Software )
  

Web Links:

• http://navet.ics.hawaii.edu/~poisson/BiL/index.html