eagle-i University of Hawaii at ManoaUniversity of Hawaii at Manoa
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FragAnchor

eagle-i ID

http://hawaii.eagle-i.net/i/0000012a-2512-45b0-c99c-aef680000001

Resource Type

  1. Algorithmic software component

Properties

  1. Resource Description
    Software shared with INBRE Bioinformatics Core. IMPORTANT: FRAGANCHOR IS NOT MAINTAINED ANYMORE. FragAnchor is based on the tandem use of a Neural Network predictor and a Hidden Markov Model predictor. The Neural Network is used to select the potential GPI-anchored sequences and the Hidden Markov Model classifies the selected sequences according to four different levels of precision (highly probable, probable, weakly probable, potential false positive). The Hidden Markov Model proposes also up to three possible locations for the anchor/cleavage site.
  2. Additional Name
    GPI-Anchored Protein Prediction Tandem System
  3. Manufacturer
    BIL Manoa
  4. Used by
    BIL Manoa
  5. Operating System
    Linux
  6. Data Input
    protein sequence data
  7. Software purpose
    Sequence analysis objective
  8. Website(s)
    http://navet.ics.hawaii.edu/~fraganchor/NNHMM/NNHMM.html
  9. Related Technique
    Protein identification
  10. Software license
    Proprietary commercial software license
  11. Algorithm used
    Hidden Markov Model
 
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Copyright © 2016 by the President and Fellows of Harvard College
The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016