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FragAnchor
eagle-i ID
http://hawaii.eagle-i.net/i/0000012a-2512-45b0-c99c-aef680000001
Resource Type
Properties
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Resource Description
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Software shared with INBRE Bioinformatics Core.
IMPORTANT: FRAGANCHOR IS NOT MAINTAINED ANYMORE.
FragAnchor is based on the tandem use of a Neural Network predictor and a Hidden Markov Model predictor. The Neural Network is used to select the potential GPI-anchored sequences and the Hidden Markov Model classifies the selected sequences according to four different levels of precision (highly probable, probable, weakly probable, potential false positive). The Hidden Markov Model proposes also up to three possible locations for the anchor/cleavage site.
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Additional Name
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GPI-Anchored Protein Prediction Tandem System
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Manufacturer
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BIL Manoa
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Used by
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BIL Manoa
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Operating System
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Linux
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Data Input
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protein sequence data
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Software purpose
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Sequence analysis objective
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Website(s)
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http://navet.ics.hawaii.edu/~fraganchor/NNHMM/NNHMM.html
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Related Technique
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Protein identification
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Software license
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Proprietary commercial software license
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Algorithm used
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Hidden Markov Model
