FragAnchor

eagle-i ID

Resource Type

Properties

1. Resource Description

   Software shared with INBRE Bioinformatics Core. IMPORTANT: FRAGANCHOR IS NOT MAINTAINED ANYMORE. FragAnchor is based on the tandem use of a Neural Network predictor and a Hidden Markov Model predictor. The Neural Network is used to select the potential GPI-anchored sequences and the Hidden Markov Model classifies the selected sequences according to four different levels of precision (highly probable, probable, weakly probable, potential false positive). The Hidden Markov Model proposes also up to three possible locations for the anchor/cleavage site.

2. Additional Name

   GPI-Anchored Protein Prediction Tandem System

3. Manufacturer

   BIL Manoa

4. Used by

   BIL Manoa

5. Operating System

   Linux

6. Data Input

   protein sequence data

7. Software purpose

   Sequence analysis objective

8. Website(s)

   http://navet.ics.hawaii.edu/~fraganchor/NNHMM/NNHMM.html

9. Related Technique

   Protein identification

10. Software license

    Proprietary commercial software license

11. Algorithm used

    Hidden Markov Model